Please see the workshop overview page for more information about how to register and prepare for our introductory workshops!
- Linux Basics for NGS Data Analysis
- Intro to NGS Data Analysis
- mRNAseq Workshop
- Advanced mRNAseq differential gene expression
- Microbiota Processing in mothur
- Microbiota Analysis in R
- ChIPseq Workshop
- Microbiome analysis using QIIME2
- Analysis of QIIME2 microbiome results
- Introduction to R / Rstudio/ bioconductor
- mRNA-Seq Analysis with R
The “Linux Essentials” workshop is an “indispensable” prerequisite for any of the other workshops. “Intro to NGS Data Analysis” is also recommended, but not required.
* There is a minimal set of software that should be installed on laptops BEFORE attending the workshop. Instructions will be provided to attendees prior to the workshop and can be found within the PDF document: GETTING PREPARED FOR CLASS
Get yourself ready for data analysis
There are numerous online resources that can help you get started learning Linux and NGS analysis. Here is a list of some useful websites:
Linux:
Software Carpentry The Unix Shell (text format)
Software Carpentry The Unix Shell (Video Lessons – recommended)
Lynda.com Up and Running with Bash Scripting
Standford open classroom Practical Linux
Linux command cheatsheet for NGS
General Data Analysis:
Standford CS109 Data Science (Current lectures); 2013 lecture archive
The “Linux Essentials” workshop is an “indispensable” prerequisite for any of the other workshops. “Intro to NGS Data Analysis” is also recommended, but not required.
* There is a minimal set of software that should be installed on laptops BEFORE attending the workshop. Instructions will be provided to attendees prior to the workshop and can be found within the PDF document: GETTING PREPARED FOR CLASS
Get yourself ready for data analysis
There are numerous online resources that can help you get started learning Linux and NGS analysis. Here is a list of some useful websites:
Linux:
Software Carpentry The Unix Shell (text format)
Software Carpentry The Unix Shell (Video Lessons – recommended)
Lynda.com Up and Running with Bash Scripting
Standford open classroom Practical Linux
Linux command cheatsheet for NGS
General Data Analysis:
Standford CS109 Data Science (Current lectures); 2013 lecture archive